Skill

bio-applied-differential-binding

Find ChIP-seq/ATAC-seq peaks that gain or lose signal between conditions using DiffBind (dba.count/dba.normalize/dba.analyze with DESeq2 or edgeR) on a consensus peak set, then annotate hits to genes/promoters with ChIPseeker annotatePeak. Use when comparing TF binding or histone marks across condit

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