alterlab-arboreto

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v0.0.0AlterLab-IEUMITAktualisiert vor 1 Mon.Quelle →

Infer gene regulatory networks (GRNs) from expression matrices using arboreto's scalable GRNBoost2 and GENIE3 tree-ensemble algorithms with Dask-distributed computation. Use when analyzing bulk or single-cell RNA-seq transcriptomics to map transcription-factor-to-target-gene regulatory interactions,

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vor 1 Mon.Letzte Aktualisierung
Skill
AutorAlterLab-IEU
Version0.0.0
LizenzMIT
KategorieWorkflow
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Infer gene regulatory networks (GRNs) from expression matrices using arboreto's scalable GRNBoost2 and GENIE3 tree-ensemble algorithms with Dask-distributed computation. Use when analyzing bulk or single-cell RNA-seq transcriptomics to map transcription-factor-to-target-gene regulatory interactions, build adjacency networks, or run the GRN-inference step of a SCENIC pipeline on large datasets. Par

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