Analyze ATAC-seq BAM/BED data with pysam and pybedtools — fragment-size QC, NFR fraction, Tn5 +4/-5 offset correction, and TF footprint scoring around motif sites. Use when doing ATAC-seq QC, computing nucleosome-free-region fraction, correcting Tn5 insertion bias, or scoring transcription-factor fo
Analyze ATAC-seq BAM/BED data with pysam and pybedtools — fragment-size QC, NFR fraction, Tn5 +4/-5 offset correction, and TF footprint scoring around motif sites. Use when doing ATAC-seq QC, computing nucleosome-free-region fraction, correcting Tn5 insertion bias, or scoring transcription-factor footprints from chromatin accessibility data.