Trim adapters (cutadapt), align to miRBase with Bowtie, quantify with featureCounts, run DESeq2/CPM DE testing and seed-match target prediction. Use for miRNA-seq/small RNA FASTQ processing or miRNA target prediction.
Trim adapters (cutadapt), align to miRBase with Bowtie, quantify with featureCounts, run DESeq2/CPM DE testing and seed-match target prediction. Use for miRNA-seq/small RNA FASTQ processing or miRNA target prediction.