bakta-genome-annotation

SKILLWorkflowcommunauté
v0.0.0jaechang-hitsNOASSERTIONMis à jour il y a 5 jSource →

Annotate bacterial and archaeal genomes and plasmids with Bakta's Prodigal/HMM/diamond pipeline. Identifies CDS, ncRNA, tRNA, rRNA, tmRNA, sORFs, CRISPR arrays, oriC/oriV/oriT, and gaps against a curated UniRef-derived database. Produces NCBI-compatible GFF3, GenBank, EMBL, JSON, FASTA, TSV, and a c

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il y a 5 jDernière mise à jour
Skill
Auteurjaechang-hits
Version0.0.0
LicenceNOASSERTION
CatégorieWorkflow
Formatsskill.md
PromptNon publié
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Claude✓ Pris en charge
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ChatGPT
Gemini
À propos

Annotate bacterial and archaeal genomes and plasmids with Bakta's Prodigal/HMM/diamond pipeline. Identifies CDS, ncRNA, tRNA, rRNA, tmRNA, sORFs, CRISPR arrays, oriC/oriV/oriT, and gaps against a curated UniRef-derived database. Produces NCBI-compatible GFF3, GenBank, EMBL, JSON, FASTA, TSV, and a circular genome plot. Use Prokka for legacy pipelines or non-bacterial kingdoms; PGAP for NCBI GenBan

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