accessibility-aggregation

SKILLWorkflowcommunity
v0.0.0ammawlaAGPL-3.0Updated 21d agoSource →

Build comprehensive chromatin accessibility maps by aggregating ATAC-seq and DNase-seq narrowPeak data across multiple ENCODE experiments, donors, and labs. Use when the user wants to answer "where is chromatin accessible in my tissue?" by combining peak calls into a union peak set. Handles cross-la

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21d agoLast update
Skill
Authorammawla
Version0.0.0
LicenseAGPL-3.0
CategoryWorkflow
Formatsskill.md
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About

Build comprehensive chromatin accessibility maps by aggregating ATAC-seq and DNase-seq narrowPeak data across multiple ENCODE experiments, donors, and labs. Use when the user wants to answer "where is chromatin accessible in my tissue?" by combining peak calls into a union peak set. Handles cross-lab variation, ATAC vs DNase platform differences, and ENCODE blocklist filtering.

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