algo-suffix-arrays

SKILLWorkflowcommunity
v0.0.0Pavel-KravchenkoUnknownUpdated 1mo agoSource →

Build a suffix array (Manber-Myers O(n log n)) and LCP array (Kasai's O(n)) in Python; binary-search substrings, count k-mers, find longest repeated motifs. Use for text indexing, pattern search, or aligner (BWA-like) internals.

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1mo agoLast update
Skill
AuthorPavel-Kravchenko
Version0.0.0
LicenseUnknown
CategoryWorkflow
Formatsskill.md
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Build a suffix array (Manber-Myers O(n log n)) and LCP array (Kasai's O(n)) in Python; binary-search substrings, count k-mers, find longest repeated motifs. Use for text indexing, pattern search, or aligner (BWA-like) internals.

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