bio-applied-assembly-sv

SKILLWorkflowcommunity
v0.0.0Pavel-KravchenkoUnknownUpdated 1mo agoSource →

Assemble ONT/HiFi reads with Flye/Hifiasm, polish with Medaka, QC with QUAST/BUSCO, call SVs (DEL/INS/INV/DUP/BND) with Sniffles2. Use for long-read assembly, N50/BUSCO QC, or nanopore/HiFi SV calling to VCF.

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1mo agoLast update
Skill
AuthorPavel-Kravchenko
Version0.0.0
LicenseUnknown
CategoryWorkflow
Formatsskill.md
PromptNot published
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Claude✓ Supported
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About

Assemble ONT/HiFi reads with Flye/Hifiasm, polish with Medaka, QC with QUAST/BUSCO, call SVs (DEL/INS/INV/DUP/BND) with Sniffles2. Use for long-read assembly, N50/BUSCO QC, or nanopore/HiFi SV calling to VCF.

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