bio-applied-bio-data-formats

SKILLWorkflowcommunity
v0.0.0Pavel-KravchenkoUnknownUpdated 1mo agoSource →

Parse/write FASTA, FASTQ, SAM/BAM, VCF, BED, GFF/GTF with pysam and pure Python; decode SAM FLAG/CIGAR; reconcile 0-based vs 1-based coordinates. Use for custom format parsers or off-by-one coordinate bugs.

Community-submitted skill. Not yet reviewed by the Forge team. Full prompt content may not be available.Request review →
4Repo stars
1Clients
1Formats
1mo agoLast update
Skill
AuthorPavel-Kravchenko
Version0.0.0
LicenseUnknown
CategoryWorkflow
Formatsskill.md
PromptNot published
Compatibility
Claude✓ Supported
Cursor—
Copilot—
ChatGPT—
Gemini—
About

Parse/write FASTA, FASTQ, SAM/BAM, VCF, BED, GFF/GTF with pysam and pure Python; decode SAM FLAG/CIGAR; reconcile 0-based vs 1-based coordinates. Use for custom format parsers or off-by-one coordinate bugs.

Keywords
skillclaude