bio-applied-cell-type-annotation

SKILLWorkflowcommunity
v0.0.0Pavel-KravchenkoUnknownUpdated 1mo agoSource →

Annotate scRNA-seq Leiden/Louvain clusters into cell types via canonical marker scoring, SingleR reference correlation, and CellTypist logistic-regression classification on an AnnData/SingleCellExperiment object. Use when doing cell type annotation, labeling clusters, scoring marker genes on a UMAP,

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1mo agoLast update
Skill
AuthorPavel-Kravchenko
Version0.0.0
LicenseUnknown
CategoryWorkflow
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Annotate scRNA-seq Leiden/Louvain clusters into cell types via canonical marker scoring, SingleR reference correlation, and CellTypist logistic-regression classification on an AnnData/SingleCellExperiment object. Use when doing cell type annotation, labeling clusters, scoring marker genes on a UMAP, running SingleR or CellTypist, or resolving ambiguous/NA-labeled clusters in PBMC or other scRNA-se

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