Compute PCA/UMAP embeddings and Leiden clusters for scRNA-seq with scanpy/Seurat; tune n_pcs/n_neighbors/resolution, find markers via rank_genes_groups. Use for UMAP plots, clustering single-cell data, or picking PCs/resolution.
Compute PCA/UMAP embeddings and Leiden clusters for scRNA-seq with scanpy/Seurat; tune n_pcs/n_neighbors/resolution, find markers via rank_genes_groups. Use for UMAP plots, clustering single-cell data, or picking PCs/resolution.
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