bio-applied-dimensionality-reduction

SKILLWorkflowcommunity
v0.0.0Pavel-KravchenkoUnknownUpdated 1mo agoSource →

Compute PCA/UMAP embeddings and Leiden clusters for scRNA-seq with scanpy/Seurat; tune n_pcs/n_neighbors/resolution, find markers via rank_genes_groups. Use for UMAP plots, clustering single-cell data, or picking PCs/resolution.

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1mo agoLast update
Skill
AuthorPavel-Kravchenko
Version0.0.0
LicenseUnknown
CategoryWorkflow
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Compute PCA/UMAP embeddings and Leiden clusters for scRNA-seq with scanpy/Seurat; tune n_pcs/n_neighbors/resolution, find markers via rank_genes_groups. Use for UMAP plots, clustering single-cell data, or picking PCs/resolution.

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