Search 8.5M scientific papers with LLM TLDRs, citations, linked entities, figures, and full text.
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https://mcp.tomesphere.com/api/mcp9 tools · 791mssearch_papersSearch 8.5 million academic papers (arXiv + biomedical: PMC / bioRxiv / medRxiv, all disciplines) by topic, keyword, author, or linked entity (gene / protein / disease). Each hit returns id, title, TLDR, type, and links. Use to find papers about a topic, e.g. 'transformer efficiency' or 'CRISPR bas…Search 8.5 million academic papers (arXiv + biomedical: PMC / bioRxiv / medRxiv, all disciplines) by topic, keyword, author, or linked entity (gene / protein / disease). Each hit returns id, title, TLDR, type, and links. Use to find papers about a topic, e.g. 'transformer efficiency' or 'CRISPR bas…
| Parameter | Type | Description |
|---|---|---|
| query* | string | Natural-language search query. E.g. 'transformer attention efficiency', 'graph neural networks for molecular property prediction'. |
| k | integer | Number of results (default 10, max 25). |
| year_min | integer | Earliest publication year, e.g. 2024. |
| year_max | integer | Latest publication year. |
get_paperFetch a paper's full metadata: title, authors, year, abstract, TLDR (LLM-generated), key findings, citation count, GitHub repos, HuggingFace models/datasets, videos, peer reviews, and links. Accepts an arXiv ID (e.g. '2401.12345' or '1706.03762v5') or an OpenAlex Work ID (e.g. 'W4390723197'). Use w…Fetch a paper's full metadata: title, authors, year, abstract, TLDR (LLM-generated), key findings, citation count, GitHub repos, HuggingFace models/datasets, videos, peer reviews, and links. Accepts an arXiv ID (e.g. '2401.12345' or '1706.03762v5') or an OpenAlex Work ID (e.g. 'W4390723197'). Use w…
| Parameter | Type | Description |
|---|---|---|
| id* | string | arXiv ID like '2401.12345' or OpenAlex Work ID like 'W4390723197'. |
similar_papersFind papers semantically similar to a given paper using SPECTER2 embeddings (trained on scientific-citation triplets). Returns nearest neighbors with TLDR. Use when the user wants 'papers like X' or 'what's adjacent to this work'.Find papers semantically similar to a given paper using SPECTER2 embeddings (trained on scientific-citation triplets). Returns nearest neighbors with TLDR. Use when the user wants 'papers like X' or 'what's adjacent to this work'.
| Parameter | Type | Description |
|---|---|---|
| id* | string | arXiv ID or OpenAlex Work ID. |
| k | integer | Number of neighbors (default 10, max 25). |
citationsGet papers that cite the given paper (who refers to this work). Use when the user asks 'who cites X', 'what's the impact', or wants follow-up work. Note: 2024+ citation coverage is sparse; indexing in progress.Get papers that cite the given paper (who refers to this work). Use when the user asks 'who cites X', 'what's the impact', or wants follow-up work. Note: 2024+ citation coverage is sparse; indexing in progress.
| Parameter | Type | Description |
|---|---|---|
| id* | string | arXiv ID or OpenAlex Work ID. |
| k | integer | Max citing papers (default 25, max 100). |
referencesGet the papers that this paper cites (its bibliography). Use when the user asks 'what does X cite' or 'show me the references'.Get the papers that this paper cites (its bibliography). Use when the user asks 'what does X cite' or 'show me the references'.
| Parameter | Type | Description |
|---|---|---|
| id* | string | arXiv ID or OpenAlex Work ID. |
| k | integer | Max references (default 25, max 100). |
get_full_textFetch a paper's full body text as Markdown (methods, results, protocols, inline tables) — use for deep questions the abstract can't answer. Accepts an arXiv ID (2401.12345), a PMC ID (PMC5339222), or a bioRxiv/medRxiv DOI (10.1101/…).Fetch a paper's full body text as Markdown (methods, results, protocols, inline tables) — use for deep questions the abstract can't answer. Accepts an arXiv ID (2401.12345), a PMC ID (PMC5339222), or a bioRxiv/medRxiv DOI (10.1101/…).
| Parameter | Type | Description |
|---|---|---|
| id* | string | arXiv ID, PMC ID, or 10.1101/… DOI. |
get_figuresGet a paper's real figure images — URLs, labels, and captions. Most biomedical papers have figures; arXiv papers often don't. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.Get a paper's real figure images — URLs, labels, and captions. Most biomedical papers have figures; arXiv papers often don't. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.
| Parameter | Type | Description |
|---|---|---|
| id* | string | arXiv ID, PMC ID, or 10.1101/… DOI. |
get_entitiesGet the biomedical entities linked to a paper: genes, proteins, chemicals, diseases, species, mutations, cell lines, and clinical-trial (NCT) IDs. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.Get the biomedical entities linked to a paper: genes, proteins, chemicals, diseases, species, mutations, cell lines, and clinical-trial (NCT) IDs. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.
| Parameter | Type | Description |
|---|---|---|
| id* | string | arXiv ID, PMC ID, or 10.1101/… DOI. |
get_structureResolve a gene/protein name (e.g. 'TP53', 'CD44') or UniProt accession to its 3D structure — returns the UniProt accession + AlphaFold model URL (and PDB when available). Great for a gene named in a paper's entities.Resolve a gene/protein name (e.g. 'TP53', 'CD44') or UniProt accession to its 3D structure — returns the UniProt accession + AlphaFold model URL (and PDB when available). Great for a gene named in a paper's entities.
| Parameter | Type | Description |
|---|---|---|
| name* | string | Gene/protein symbol (TP53, CD44) or UniProt accession (P04637). |
9 of 9 tools published a description.
Tool names and descriptions are written by the publisher and shown verbatim as inert text. They are the strings an MCP client passes to a model, so Forge scans them for prompt-injection patterns — any finding appears with the security scan above. “Privileged” is a keyword match on the tool name, not an audit of what the tool does: a benign-sounding name can still do anything.
Search 8.5M scientific papers with LLM TLDRs, citations, linked entities, figures, and full text.
Linked names open Forge’s index of every entry observed exposing that tool. Browse all indexed tools.
This entry publishes no npm package, so Forge has no dependency tree for it. That is a gap in coverage — not a statement that it has no dependencies.