deepspot-m

SKILLWorkflowcommunity
v0.0.0K-Dense-AIMITUpdated todaySource →

Generate transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Use when you need spatial gene expression in log1p-CPM for 224x224 tiles at about 20x, want to query protein-coding genes by symbol instead of a fixed panel, or want to run prediction across a whole slide

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todayLast update
Skill
AuthorK-Dense-AI
Version0.0.0
LicenseMIT
CategoryWorkflow
Formatsskill.md
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Generate transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Use when you need spatial gene expression in log1p-CPM for 224x224 tiles at about 20x, want to query protein-coding genes by symbol instead of a fixed panel, or want to run prediction across a whole slide after tiling with histolab.

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