deeptools-ngs-analysis

Name: deeptools-ngs-analysis
Author: jaechang-hits

SKILLWorkflowcommunity

v0.0.0jaechang-hitsNOASSERTIONUpdated 1mo agoSource →

NGS CLI for ChIP/RNA/ATAC-seq. BAM→bigWig with RPGC/CPM/RPKM, sample correlation/PCA, heatmaps/profiles around features, fingerprints. For alignment use STAR/BWA; for peak calling use MACS2.

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1mo agoLast update

Skill

Authorjaechang-hits

Version0.0.0

LicenseNOASSERTION

CategoryWorkflow

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NGS CLI for ChIP/RNA/ATAC-seq. BAM→bigWig with RPGC/CPM/RPKM, sample correlation/PCA, heatmaps/profiles around features, fingerprints. For alignment use STAR/BWA; for peak calling use MACS2.

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