io.github.cyanheads/protein-mcp-server

MCPcommunity
v1.0.3io.github.cyanheadsUnknownUpdated 1y agonpmGitHub

MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.

A powerful Model Context Protocol server providing programmatic access to 3D protein structural data from RCSB PDB, PDBe, and UniProt. Features multi-provider orchestration, comprehensive structural analysis tools, and full observability. Built for performance and scalability, with native support for serverless deployment (Cloudflare Workers). [](./CHANGELOG.md) []( []( [](./LICENSE) []( []( [](…

Works in
ClaudeCursorCopilotGemini

Inferred from the transports this listing declares (stdio). A client not listed here hasn’t been ruled out — it just isn’t something Forge can confirm.

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5GitHub stars
1Forks
1y agoLast update
Package
Authorio.github.cyanheads
LicenseUnknown
Version1.0.3
Sourcemcp-registry
npmprotein-mcp-server
GitHubcyanheads/protein-mcp-server
SBOMCycloneDX 1.6 ↓
Trust Status
B
60/100Good
✓Listed in Forge index+10/10
—Publisher identity verified+0/20
→ Publisher: run `forge publish` from the package repo to claim ownership
—Ed25519 publish signature+0/5
→ Included automatically when the publisher runs `forge publish`
—Domain verification+0/5
→ Publisher: host /.well-known/forge.json on the package homepage with { "publisher": "<github-login>" }
—npm Trusted Publishing (Sigstore)+0/5
→ Publish from GitHub Actions with --provenance so the attestation binds this package to this repo
—npm maintainer match+0/5
→ Earned once your identity is verified above and that login is an npm maintainer of this package
✓CVE scan · clean+30/30
✓Static analysis · clean+20/20
Paste into Claude Code, Cursor, or any AI assistant to fix all gaps
StatusCommunity-indexed
PublisherUnverified
SignatureUnsigned
Domain—
Provenance—
Dependencies60 resolved · 3 with advisories
Tool surface—
Security scan⚠ Warnings (4)v1.0.3 · 3mo agoHow well does this scan work?
HIGH@opentelemetry/auto-instrumentations-node@0.64.6Prometheus exporter process crash via malformed HTTP requestHIGH@opentelemetry/sdk-node@0.205.0Prometheus exporter process crash via malformed HTTP requestHIGHvalidator@13.15.15Validator is Vulnerable to Incomplete Filtering of One or More Instances of Special ElementsMODERATEvalidator@13.15.15validator.js has a URL validation bypass vulnerability in its isURL function
EvalsNone
IndexedJun 13, 2026

Verification confirms publisher identity (repo ownership), not code safety. The security scan covers known CVEs and suspicious install scripts.

Tools

No tool declarations found in the source3mo ago

Forge read 0 source files from the published package tarball and matched no MCP tool registrations. Extraction is pattern-based over shipped source: a server that builds its tool list at runtime, or that ships only bundled or minified code, registers nothing this can see. Treat it as “not detected”, not as “exposes none”.

About

A powerful Model Context Protocol server providing programmatic access to 3D protein structural data from RCSB PDB, PDBe, and UniProt. Features multi-provider orchestration, comprehensive structural analysis tools, and full observability. Built for performance and scalability, with native support for serverless deployment (Cloudflare Workers). [](./CHANGELOG.md) []( []( [](./LICENSE) []( []( []( This server provides a powerful suite of tools for accessing and analyzing protein structure data.…

Keywords
mcp
Alternatives
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