io.github.galaxyproject/galaxy-mcp

MCPcommunity
v1.3.0io.github.galaxyprojectUnknownUpdated 8mo agoGitHub

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

This project provides a Model Context Protocol (MCP) server for interacting with the Galaxy bioinformatics platform. It enables AI assistants and other clients to connect to Galaxy instances, search and execute tools, manage workflows, and access other features of the Galaxy ecosystem. This repository contains a Python-based MCP server implementation that provides comprehensive integration with…

Works in
ClaudeCursorCopilotGemini

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38GitHub stars
23Forks
8mo agoLast update
Package
Authorio.github.galaxyproject
LicenseUnknown
Version1.3.0
Sourcemcp-registry
GitHubgalaxyproject/galaxy-mcp
SBOMCycloneDX 1.6 ↓
Trust Status
B
60/100Good
✓Listed in Forge index+10/10
—Publisher identity verified+0/20
→ Publisher: run `forge publish` from the package repo to claim ownership
—Ed25519 publish signature+0/5
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—Domain verification+0/5
→ Publisher: host /.well-known/forge.json on the package homepage with { "publisher": "<github-login>" }
—npm Trusted Publishing (Sigstore)+0/5
→ Publish from GitHub Actions with --provenance so the attestation binds this package to this repo
—npm maintainer match+0/5
→ Earned once your identity is verified above and that login is an npm maintainer of this package
✓CVE scan · clean+30/30
✓Static analysis · clean+20/20
Paste into Claude Code, Cursor, or any AI assistant to fix all gaps
StatusCommunity-indexed
PublisherUnverified
SignatureUnsigned
Domain—
Provenance—
DependenciesNot audited
Tool surface—
Security scan✓ Cleanv1.8.0 · 3mo agoHow well does this scan work?
EvalsNone
IndexedJun 13, 2026

Verification confirms publisher identity (repo ownership), not code safety. The security scan covers known CVEs and suspicious install scripts.

Tools

No tool declarations found in the source3mo ago

Forge read 0 source files from the published package tarball and matched no MCP tool registrations. Extraction is pattern-based over shipped source: a server that builds its tool list at runtime, or that ships only bundled or minified code, registers nothing this can see. Treat it as “not detected”, not as “exposes none”.

About

This project provides a Model Context Protocol (MCP) server for interacting with the Galaxy bioinformatics platform. It enables AI assistants and other clients to connect to Galaxy instances, search and execute tools, manage workflows, and access other features of the Galaxy ecosystem. This repository contains a Python-based MCP server implementation that provides comprehensive integration with Galaxy's API through BioBlend. Note: There is also a work-in-progress TypeScript implementation…

Keywords
mcp
Alternatives
Comparing tool surfaces…

No dependency coverage

Forge's dependency resolver reads npm metadata only, so this PyPI package has no resolved tree. That is a gap in coverage, not a clean bill of health.