io.github.galaxyproject/galaxy-mcp

MCPcommunity
v1.3.0io.github.galaxyprojectUnknownUpdated 5mo agoGitHub

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

This project provides a Model Context Protocol (MCP) server for interacting with the Galaxy bioinformatics platform. It enables AI assistants and other clients to connect to Galaxy instances, search and execute tools, manage workflows, and access other features of the Galaxy ecosystem. This repository contains a Python-based MCP server implementation that provides comprehensive integration with…

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5mo agoLast update
Package
Authorio.github.galaxyproject
LicenseUnknown
Version1.3.0
Sourcemcp-registry
GitHubgalaxyproject/galaxy-mcp
Trust Status
B
60/100Good
✓Listed in Forge index+10/10
—Publisher identity verified+0/25
→ Publisher: run `forge publish` from the package repo to claim ownership
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—Domain verification+0/5
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✓CVE scan · clean+30/30
✓Static analysis · clean+20/20
—npm provenance (Sigstore)+0/5
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StatusCommunity-indexed
PublisherUnverified
SignatureUnsigned
Domain—
Provenance—
DependenciesNot audited
Tool surface—
Security scan✓ Cleanv1.8.0 · 19d ago
EvalsNone
IndexedJun 13, 2026

Verification confirms publisher identity (repo ownership), not code safety. The security scan covers known CVEs and suspicious install scripts — it cannot prove the absence of malicious code.

About

This project provides a Model Context Protocol (MCP) server for interacting with the Galaxy bioinformatics platform. It enables AI assistants and other clients to connect to Galaxy instances, search and execute tools, manage workflows, and access other features of the Galaxy ecosystem. This repository contains a Python-based MCP server implementation that provides comprehensive integration with Galaxy's API through BioBlend. Note: There is also a work-in-progress TypeScript implementation…

Keywords
mcp