MCP server for Boolean network simulation and attractor analysis using MaBoSS
This repository centralizes Model Context Protocol (MCP) servers that wrap Python‑based mechanistic / systems biology modelling tools. Each subfolder contains a entrypoint plus a README describing the specific tool interface. Current servers (see their own READMEs & upstream docs): Tool | Folder | Upstream Documentation | MCP Registry | ------|--------|------------------------|--------------|…
Verification confirms publisher identity (repo ownership), not code safety. The security scan covers known CVEs and suspicious install scripts — it cannot prove the absence of malicious code.
This repository centralizes Model Context Protocol (MCP) servers that wrap Python‑based mechanistic / systems biology modelling tools. Each subfolder contains a entrypoint plus a README describing the specific tool interface. Current servers (see their own READMEs & upstream docs): Tool | Folder | Upstream Documentation | MCP Registry | ------|--------|------------------------|--------------| PhysiCell (settings wrapper) | | | | All servers are Python processes speaking MCP over stdio. Then run…