Biotech intelligence for AI agents: drugs, targets, diagnostics, PoS estimates, and writeups.
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https://biocosm-mcp.fly.dev/mcp13 tools · 459mssearch_nodesSearch BioCosm nodes by name, gene symbol, target, therapeutic area, or company.
Results are ranked: exact name/brand matches first, then partial name
matches, with a node-type prior (canonical drug/diagnostic nodes rank above
gene-target nodes, which rank above ChEMBL salt-form duplicates). Nodes…Search BioCosm nodes by name, gene symbol, target, therapeutic area, or company. Results are ranked: exact name/brand matches first, then partial name matches, with a node-type prior (canonical drug/diagnostic nodes rank above gene-target nodes, which rank above ChEMBL salt-form duplicates). Nodes…
| Parameter | Type | Description |
|---|---|---|
| query* | string | Search term (e.g. "breast cancer", "pembrolizumab", "Merck") |
| limit | integer | Maximum results to return (default 20, max 100) |
get_nodeGet full details for a single BioCosm node: identity and all name aliases,
classification, gene targets and mechanism, therapeutic areas, companies,
revenue history where available (sparse: ~100 drugs, mostly blockbusters,
as annualized quarterly estimates; source links when present), probability-o…Get full details for a single BioCosm node: identity and all name aliases, classification, gene targets and mechanism, therapeutic areas, companies, revenue history where available (sparse: ~100 drugs, mostly blockbusters, as annualized quarterly estimates; source links when present), probability-o…
| Parameter | Type | Description |
|---|---|---|
| node_id* | string | The node identifier (e.g. "pembrolizumab", "trastuzumab") |
get_writeupGet the full writeup for a BioCosm node, including all sections, citations,
structured data, and validation score.Get the full writeup for a BioCosm node, including all sections, citations, structured data, and validation score.
| Parameter | Type | Description |
|---|---|---|
| node_id* | string | The node identifier (e.g. "pembrolizumab") |
list_by_therapeutic_areaList all nodes in a given therapeutic area.List all nodes in a given therapeutic area.
| Parameter | Type | Description |
|---|---|---|
| area* | string | Therapeutic area to search (e.g. "breast cancer", "non-small cell lung cancer") |
| limit | integer | Maximum results (default 50) |
get_company_portfolioGet a company's full drug/diagnostic portfolio from BioCosm.Get a company's full drug/diagnostic portfolio from BioCosm.
| Parameter | Type | Description |
|---|---|---|
| company_name* | string | Company name (e.g. "Merck", "Roche", "Illumina") |
get_statsGet a high-level overview of the BioCosm database: total nodes, writeups,
companies, breakdowns by type/status/domain, validation scores, and recent
pipeline runs.Get a high-level overview of the BioCosm database: total nodes, writeups, companies, breakdowns by type/status/domain, validation scores, and recent pipeline runs.
No input schema was published for this tool.
get_staleness_reportGet writeup staleness report: overall stats, top stale nodes, data source freshness.Get writeup staleness report: overall stats, top stale nodes, data source freshness.
| Parameter | Type | Description |
|---|---|---|
| limit | integer | Number of top stale nodes to return (default 20) |
get_node_freshnessGet freshness details for a single node: writeup age, enrichment hash match,
staleness score, validation score.Get freshness details for a single node: writeup age, enrichment hash match, staleness score, validation score.
| Parameter | Type | Description |
|---|---|---|
| node_id* | string | The node identifier (e.g. "pembrolizumab") |
find_by_targetFind all drugs that target a specific gene/protein.Find all drugs that target a specific gene/protein.
| Parameter | Type | Description |
|---|---|---|
| target_gene* | string | Gene symbol or target name (e.g. "EGFR", "KRAS", "PD-1") |
| limit | integer | Maximum results (default 50, max 200) |
find_by_phaseList drugs/diagnostics at a specific clinical phase.List drugs/diagnostics at a specific clinical phase.
| Parameter | Type | Description |
|---|---|---|
| phase* | string | One of "approved", "on_market", "phase3", "phase2", "phase1", "in_development", "cleared", "ldt", "ruo" |
| node_type | — | Optional filter — "drug", "pipeline", "diagnostic", "target" |
| limit | integer | Maximum results (default 100, max 500) |
find_relatedFind nodes connected to a given node. Three relationship types are
derived on-the-fly:
- "drug_target": for a drug, the targets it hits (and vice versa for a
target node, the drugs that hit it)
- "same_company": drugs sharing a company with this node
- "same_target_class": drugs with the same m…Find nodes connected to a given node. Three relationship types are derived on-the-fly: - "drug_target": for a drug, the targets it hits (and vice versa for a target node, the drugs that hit it) - "same_company": drugs sharing a company with this node - "same_target_class": drugs with the same m…
| Parameter | Type | Description |
|---|---|---|
| node_id* | string | Source node identifier |
| link_type | — | Optional filter — one of "drug_target", "same_target_class", "same_company". If None, returns all three groups. |
| limit | integer | Maximum results per link type (default 30) |
get_pos_scoreGet the Probability of Success estimate for a node, including the
base rate, adjustment factors with reasoning, confidence interval, and
model version.
Returns None for nodes without a PoS score (typically only late-stage
pipeline drugs are scored).Get the Probability of Success estimate for a node, including the base rate, adjustment factors with reasoning, confidence interval, and model version. Returns None for nodes without a PoS score (typically only late-stage pipeline drugs are scored).
| Parameter | Type | Description |
|---|---|---|
| node_id* | string | Node identifier |
get_coverageReport BioCosm's actual data coverage so you never mistake missing data for
a real-world zero. An empty or absent field on a node means "not in BioCosm's
data," never a true zero. BioCosm is AI-generated and may contain errors.Report BioCosm's actual data coverage so you never mistake missing data for a real-world zero. An empty or absent field on a node means "not in BioCosm's data," never a true zero. BioCosm is AI-generated and may contain errors.
No input schema was published for this tool.
13 of 13 tools published a description.
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Biotech intelligence for AI agents: drugs, targets, diagnostics, PoS estimates, and writeups.
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