# io.github.nhoverte/biocosm

Biotech intelligence for AI agents: drugs, targets, diagnostics, PoS estimates, and writeups.

- **Type:** MCP server
- **Trust:** 60/100 (B), scored on the content rubric
- **Verification:** community-indexed — nobody has claimed this listing
- **Version:** 1.0.0
- **Author:** io.github.nhoverte
- **License:** Unknown
- **Endpoints:** streamable-http https://biocosm-mcp.fly.dev/mcp
- **Source:** https://biocosm.io/mcp
- **Endpoint health:** reachable (last checked 2026-10-03T06:28:46.825Z, 6 samples) — uptime is not a security property and is not part of the trust score
- **Compatible clients:** claude-code, cursor, copilot, chatgpt, gemini (basis: transport)

## Trust

60/100 (B), scored on the content rubric
- Publisher verified: no
- Install scripts: nothing suspicious found
- Prompt-injection scan: clean
- Obfuscation scan: clean
- Evidence age: 29 days

## Security scan

- **Status:** clean
- **Scanned:** 2026-09-05T15:33:34.597Z
- **Version scanned:** live
- **CVEs:** no coverage — this entry has no package coordinates to query OSV against, so "no known CVEs" is NOT asserted for it.

## Tools

13 declared. Observed from a live `tools/list` probe.
- `search_nodes` — Search BioCosm nodes by name, gene symbol, target, therapeutic area, or company. Results are ranked: exact name/brand matches first, then partial name matches, 
- `get_node` — Get full details for a single BioCosm node: identity and all name aliases, classification, gene targets and mechanism, therapeutic areas, companies, revenue his
- `get_writeup` — Get the full writeup for a BioCosm node, including all sections, citations, structured data, and validation score.
- `list_by_therapeutic_area` — List all nodes in a given therapeutic area.
- `get_company_portfolio` — Get a company's full drug/diagnostic portfolio from BioCosm.
- `get_stats` — Get a high-level overview of the BioCosm database: total nodes, writeups, companies, breakdowns by type/status/domain, validation scores, and recent pipeline ru
- `get_staleness_report` — Get writeup staleness report: overall stats, top stale nodes, data source freshness.
- `get_node_freshness` — Get freshness details for a single node: writeup age, enrichment hash match, staleness score, validation score.
- `find_by_target` — Find all drugs that target a specific gene/protein.
- `find_by_phase` — List drugs/diagnostics at a specific clinical phase.
- `find_related` — Find nodes connected to a given node. Three relationship types are derived on-the-fly: - "drug_target": for a drug, the targets it hits (and vice versa for a ta
- `get_pos_score` — Get the Probability of Success estimate for a node, including the base rate, adjustment factors with reasoning, confidence interval, and model version. Returns 
- `get_coverage` — Report BioCosm's actual data coverage so you never mistake missing data for a real-world zero. An empty or absent field on a node means "not in BioCosm's data,"

## Install

**Verdict: review** — Installable, but 2 things to check first: No CVE coverage: this entry has no npm/PyPI coordinates to query OSV against, so "no known vulnerabilities" is not a claim that can be made about it.
**Cautions** (coverage gaps and advisories — never blocking)
- No CVE coverage: this entry has no npm/PyPI coordinates to query OSV against, so "no known vulnerabilities" is not a claim that can be made about it.
- No publisher has proved control of this listing; it is indexed, not vouched for.
**Config** (claude-code):
```json
"{\n  \"mcpServers\": {\n    \"biocosm\": {\n      \"type\": \"http\",\n      \"url\": \"https://biocosm-mcp.fly.dev/mcp\"\n    }\n  }\n}"
```

## Blast radius

Contained to moderate — no credential declaration found, from the publisher, the upstream registry, or the README. Known so far: runs on someone else's infrastructure; read-only tool surface.
- Floor 9, ceiling 27 (tier: unknown)
- `unknown` means the floor and ceiling land in different bands — not measured enough to name one. It does not mean low.
- This is impact, not likelihood. A high radius is not a defect: a filesystem server is supposed to write files. It is never part of the trust score.

## Machine-readable views of this entry

- Signed JSON: https://forgeregistry.com/api/v1/packages/io.github.nhoverte%2Fbiocosm
- Install plan: https://forgeregistry.com/api/v1/packages/io.github.nhoverte%2Fbiocosm/install-plan
- Alternatives: https://forgeregistry.com/api/v1/alternatives/io.github.nhoverte%2Fbiocosm
- HTML page: https://forgeregistry.com/registry/io.github.nhoverte%2Fbiocosm
- MCP: POST https://forgeregistry.com/api/mcp → `forge_get_package` / `forge_install_plan`

## About this document

Generated by Forge (https://forgeregistry.com) — a compact rendering of the same record served, signed, at the JSON URL above. Trust and scan facts are the registry's own measurements; anything Forge did not measure is named as unmeasured rather than omitted.