pipeline-chipseq

SKILLWorkflowcommunity
v0.0.0ammawlaAGPL-3.0Updated 2mo agoSource →

Execute ENCODE ChIP-seq processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides stage-by-stage Nextflow execution with Docker containers and cloud deployment. Use when users need to process ChIP-seq data following ENCODE standards, run peak calling with MACS2, pe

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2mo agoLast update
Skill
Authorammawla
Version0.0.0
LicenseAGPL-3.0
CategoryWorkflow
Formatsskill.md
PromptNot published
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About

Execute ENCODE ChIP-seq processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides stage-by-stage Nextflow execution with Docker containers and cloud deployment. Use when users need to process ChIP-seq data following ENCODE standards, run peak calling with MACS2, perform IDR analysis, or generate signal tracks. Trigger on: ChIP-seq pipeline, run ChIP-seq, process

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