rdkit-conf

SKILLWorkflowcommunity
v0.0.0jinzhezenggroupLGPL-3.0Updated 1mo agoSource →

A standardized CLI wrapper for RDKit 3D/2D conformer generation that samples multiple conformers per molecule (ETKDGv3, default 10), optimizes each with a force field (MMFF94s/UFF), keeps the lowest-energy conformer, automatically falls back to 2D layout on total embedding failure with a printed war

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1mo agoLast update
Skill
Authorjinzhezenggroup
Version0.0.0
LicenseLGPL-3.0
CategoryWorkflow
Formatsskill.md
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About

A standardized CLI wrapper for RDKit 3D/2D conformer generation that samples multiple conformers per molecule (ETKDGv3, default 10), optimizes each with a force field (MMFF94s/UFF), keeps the lowest-energy conformer, automatically falls back to 2D layout on total embedding failure with a printed warning, and writes results to SDF or XYZ format. USE WHEN you need to generate 3D (or 2D fallback) mol

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