bio-applied-differential-binding

SKILLWorkflowcommunauté
v0.0.0Pavel-KravchenkoUnknownMis à jour il y a 1 moisSource →

Find ChIP-seq/ATAC-seq peaks that gain or lose signal between conditions using DiffBind (dba.count/dba.normalize/dba.analyze with DESeq2 or edgeR) on a consensus peak set, then annotate hits to genes/promoters with ChIPseeker annotatePeak. Use when comparing TF binding or histone marks across condit

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il y a 1 moisDernière mise à jour
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AuteurPavel-Kravchenko
Version0.0.0
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CatégorieWorkflow
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Find ChIP-seq/ATAC-seq peaks that gain or lose signal between conditions using DiffBind (dba.count/dba.normalize/dba.analyze with DESeq2 or edgeR) on a consensus peak set, then annotate hits to genes/promoters with ChIPseeker annotatePeak. Use when comparing TF binding or histone marks across conditions, building volcano/MA plots from dba.report() output, or annotating differential peaks to neares

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